Index _ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z _ __mapper_args__ (protocol_manager.db.postgres.AcquisitionTask attribute) (protocol_manager.db.postgres.Task attribute) __table_args__ (patient_manager.api.db.Patient attribute) (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Result attribute) (protocol_manager.db.postgres.Task attribute) (user_login_manager.db.UserSQL attribute) __tablename__ (device_manager.api.db.Device attribute) (patient_manager.api.db.Patient attribute) (protocol_manager.db.postgres.AcquisitionTask attribute) (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Result attribute) (protocol_manager.db.postgres.Task attribute) (user_login_manager.db.UserSQL attribute) _broadcast_task_status() (in module device_manager.api.device_websocket) _dag_config (in module orchestration_engine.repository) _get_dag_config_from_run() (in module orchestration_engine.sensors) _get_path() (orchestration_engine.io.base.ScanHubIOManager method) _HEARTBEAT_CHECK_INTERVAL_S (in module device_manager.api.device_websocket) _HEARTBEAT_TIMEOUT_S (in module device_manager.api.device_websocket) _log (in module orchestration_engine.notifier) _pick_result_type() (in module device_manager.api.device_websocket) _resolve_dicom_path() (in module protocol_manager.api.result_api) _resolve_mrd_path() (in module protocol_manager.api.result_api) _SSE_TERMINAL_STATUSES (in module device_manager.api.device_websocket) _stream_to_file() (in module device_manager.api.device_websocket) _submit_reconstruction_job() (in module device_manager.api.device_websocket) A access_token (shared_libraries.models.AcquisitionPayload attribute) (shared_libraries.models.User attribute) (user_login_manager.db.UserSQL attribute) ACQUIRED (shared_libraries.models.ItemStatus attribute) ACQUISITION (shared_libraries.models.TaskType attribute) acquisition_data_asset() (in module orchestration_engine.assets.acquisition_data) acquisition_data_op() (in module orchestration_engine.jobs.acquisition_data) acquisition_id (shared_libraries.models.MRDAcquisitionInfo attribute) acquisition_limits (protocol_manager.db.postgres.AcquisitionTask attribute) (shared_libraries.models.AcquisitionTaskOut attribute) acquisition_parameter (protocol_manager.db.postgres.AcquisitionTask attribute) (shared_libraries.models.BaseAcquisitionTask attribute) AcquisitionData (class in orchestration_engine.assets.acquisition_data) AcquisitionLimits (class in shared_libraries.models) AcquisitionParameter (class in shared_libraries.models) AcquisitionPayload (class in shared_libraries.models) acquisitions (shared_libraries.models.MRDMetaResponse attribute) AcquisitionTask (class in protocol_manager.db.postgres) AcquisitionTaskOut (class in shared_libraries.models) add_blank_result_db() (in module protocol_manager.dal.result_dal) add_dicom_result_db() (in module protocol_manager.dal.result_dal) add_patient() (in module patient_manager.api.dal) add_protocol_data() (in module protocol_manager.dal.protocol_dal) add_task_data() (in module protocol_manager.dal.task_dal) add_user() (in module user_login_manager.dal) admin (shared_libraries.models.UserRole attribute) app (in module device_manager.main) (in module patient_manager.main) (in module protocol_manager.main) (in module user_login_manager.main) assets (in module orchestration_engine.repository) B Base (class in protocol_manager.db.postgres) (class in user_login_manager.db) (in module device_manager.api.db) (in module patient_manager.api.db) base_url (orchestration_engine.notifier.DeviceManagerNotifier attribute) (orchestration_engine.notifier.ProtocolManagerNotifier attribute) BaseAcquisitionTask (class in shared_libraries.models) BaseMRISequence (class in shared_libraries.models) BasePatient (class in shared_libraries.models) BaseProtocol (class in shared_libraries.models) BaseResult (class in shared_libraries.models) BaseTask (class in shared_libraries.models) birth_date (patient_manager.api.db.Patient attribute) (shared_libraries.models.BasePatient attribute) build_index_meta() (in module protocol_manager.tools.mrd_provider) BUSY (shared_libraries.models.DeviceStatus attribute) C calc_age_from_date() (in module shared_libraries.utils) calibration (protocol_manager.db.postgres.AcquisitionTask attribute) (shared_libraries.models.BaseAcquisitionTask attribute) CALIBRATION (shared_libraries.models.ResultType attribute) CalibrationType (class in shared_libraries.models) CANCELLED (shared_libraries.models.ItemStatus attribute) change_password() (in module user_login_manager.userlogin) check_no_users() (in module user_login_manager.userlogin) client (protocol_manager.db.mongodb.Database attribute) close_mongo_connection() (in module protocol_manager.db.mongodb) collection (protocol_manager.db.mongodb.Database attribute) comment (patient_manager.api.db.Patient attribute) (protocol_manager.db.postgres.Protocol attribute) (shared_libraries.models.BasePatient attribute) (shared_libraries.models.BaseProtocol attribute) compute_complex_password_hash() (in module shared_libraries.security) connect_to_mongo() (in module protocol_manager.db.mongodb) connection_with_valid_id_and_token() (in module device_manager.api.device_websocket) create_blank_result() (in module device_manager.api.exam_requests) (in module protocol_manager.api.result_api) (orchestration_engine.notifier.ProtocolManagerNotifier method) create_device() (in module device_manager.api.device_endpoints) create_dicom_result() (in module protocol_manager.api.result_api) create_first_user() (in module user_login_manager.userlogin) create_mri_sequence() (in module protocol_manager.api.mri_sequence_api) create_patient() (in module patient_manager.api.routes) create_protocol() (in module protocol_manager.api.protocol_api) create_protocol_from_template() (in module protocol_manager.api.protocol_api) create_task() (in module protocol_manager.api.task_api) create_task_from_template() (in module protocol_manager.api.task_api) create_user() (in module user_login_manager.userlogin) create_user_internal() (in module user_login_manager.userlogin) created_at (shared_libraries.models.MRISequenceOut attribute) CreateDicomResult (class in protocol_manager.api.result_api) creator (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.ProtocolOut attribute) (shared_libraries.models.TaskOut attribute) custom_http_exception_handler() (in module device_manager.main) (in module patient_manager.main) (in module protocol_manager.main) (in module user_login_manager.main) D dag_config (orchestration_engine.io.base.ScanHubIOManager attribute) DAG_CONFIG_KEY (in module orchestration_engine) DAGConfiguration (class in orchestration_engine.utils.dag_config) DAGSTER_GRAPHQL_URL (in module device_manager.api.device_websocket) dal_create_device() (in module device_manager.api.dal) dal_delete_device() (in module device_manager.api.dal) dal_get_all_devices() (in module device_manager.api.dal) dal_get_device() (in module device_manager.api.dal) dal_update_device() (in module device_manager.api.dal) DATA_LAKE_DIR (in module device_manager.api.device_websocket) (in module orchestration_engine.repository) (in module protocol_manager.tools.dicom_provider) (in module protocol_manager.tools.mrd_provider) DATA_LAKE_KEY (in module orchestration_engine) Database (class in protocol_manager.db.mongodb) DataLakeResource (class in orchestration_engine.resources) datetime_created (device_manager.api.db.Device attribute) (patient_manager.api.db.Patient attribute) (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Result attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.DeviceOut attribute) (shared_libraries.models.PatientOut attribute) (shared_libraries.models.ProtocolOut attribute) (shared_libraries.models.ResultOut attribute) (shared_libraries.models.TaskOut attribute) datetime_updated (device_manager.api.db.Device attribute) (patient_manager.api.db.Patient attribute) (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.DeviceOut attribute) (shared_libraries.models.PatientOut attribute) (shared_libraries.models.ProtocolOut attribute) (shared_libraries.models.TaskOut attribute) db (in module protocol_manager.db.mongodb) defs (in module orchestration_engine.repository) delete_blank_result() (in module device_manager.api.exam_requests) delete_device() (in module device_manager.api.device_endpoints) delete_mri_sequence_endpoint() (in module protocol_manager.api.mri_sequence_api) delete_patient() (in module patient_manager.api.dal) (in module patient_manager.api.routes) delete_protocol_data() (in module protocol_manager.dal.protocol_dal) delete_result() (in module protocol_manager.api.result_api) delete_result_db() (in module protocol_manager.dal.result_dal) delete_task() (in module protocol_manager.api.task_api) delete_task_data() (in module protocol_manager.dal.task_dal) delete_user_data() (in module user_login_manager.dal) description (device_manager.api.db.Device attribute) (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.BaseMRISequence attribute) (shared_libraries.models.BaseProtocol attribute) (shared_libraries.models.BaseTask attribute) (shared_libraries.models.DeviceCreationRequest attribute) destination (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.BaseTask attribute) Device (class in device_manager.api.db) (in module protocol_manager.db.postgres) device_id (orchestration_engine.assets.acquisition_data.AcquisitionData attribute) (protocol_manager.db.postgres.AcquisitionTask attribute) (shared_libraries.models.BaseAcquisitionTask attribute) device_last_seen (in module device_manager.api.device_websocket) device_manager module device_manager.api module device_manager.api.dal module device_manager.api.db module device_manager.api.device_endpoints module device_manager.api.device_websocket module device_manager.api.exam_requests module device_manager.main module DEVICE_MANAGER_URI (in module orchestration_engine.repository) device_name (device_manager.api.db.Device attribute) (shared_libraries.models.DeviceDetails attribute) DEVICE_NOTIFIER_KEY (in module orchestration_engine) device_parameter (orchestration_engine.assets.acquisition_data.AcquisitionData attribute) (shared_libraries.models.AcquisitionPayload attribute) DeviceCreationRequest (class in shared_libraries.models) DeviceDetails (class in shared_libraries.models) DeviceManagerNotifier (class in orchestration_engine.notifier) DeviceOut (class in shared_libraries.models) DeviceStatus (class in shared_libraries.models) DICOM (shared_libraries.models.ResultType attribute) dicom_input (in module orchestration_engine.assets.dicom_input) DICOM_IO_KEY (in module orchestration_engine) DicomIOManager (class in orchestration_engine.io.dicom_io_manager) dict_id_websocket (in module device_manager.api.device_websocket) directory (protocol_manager.api.result_api.CreateDicomResult attribute) (protocol_manager.db.postgres.Result attribute) (shared_libraries.models.SetResult attribute) download_mrd() (in module protocol_manager.api.result_api) dtype (shared_libraries.models.MRDMetaResponse attribute) dump_to_path() (orchestration_engine.io.base.ScanHubIOManager method) (orchestration_engine.io.dicom_io_manager.DicomIOManager method) (orchestration_engine.io.idata_io_manager.IDataIOManager method) dwell_time (shared_libraries.models.MRDAcquisitionInfo attribute) E email (shared_libraries.models.User attribute) (user_login_manager.db.UserSQL attribute) engineer (shared_libraries.models.UserRole attribute) ensure_uuid() (in module shared_libraries.utils) ERROR (shared_libraries.models.DeviceStatus attribute) (shared_libraries.models.ItemStatus attribute) F FAILED (shared_libraries.models.ItemStatus attribute) FEMALE (shared_libraries.models.Gender attribute) files (protocol_manager.api.result_api.CreateDicomResult attribute) (protocol_manager.db.postgres.Result attribute) (shared_libraries.models.SetResult attribute) find_mrd_file() (in module protocol_manager.tools.mrd_provider) FINISHED (shared_libraries.models.ItemStatus attribute) first_name (patient_manager.api.db.Patient attribute) (shared_libraries.models.BasePatient attribute) (shared_libraries.models.User attribute) (user_login_manager.db.UserSQL attribute) FLIPANGLE (shared_libraries.models.CalibrationType attribute) fov_offset (shared_libraries.models.AcquisitionParameter attribute) fov_rotation (shared_libraries.models.AcquisitionParameter attribute) fov_scaling (shared_libraries.models.AcquisitionParameter attribute) FREQUENCY (shared_libraries.models.CalibrationType attribute) G Gender (class in shared_libraries.models) generate_plotly_figure() (in module protocol_manager.tools.mri_sequence_plot) get_all_mri_sequences() (in module protocol_manager.api.mri_sequence_api) get_all_patient_protocols() (in module protocol_manager.api.protocol_api) get_all_patients() (in module patient_manager.api.dal) get_all_protocol_data() (in module protocol_manager.dal.protocol_dal) get_all_protocol_tasks() (in module protocol_manager.api.task_api) get_all_protocol_template_data() (in module protocol_manager.dal.protocol_dal) get_all_protocol_templates() (in module protocol_manager.api.protocol_api) get_all_results_db() (in module protocol_manager.dal.result_dal) get_all_task_data() (in module protocol_manager.dal.task_dal) get_all_task_results() (in module protocol_manager.api.result_api) get_all_task_template_data() (in module protocol_manager.dal.task_dal) get_all_task_templates() (in module protocol_manager.api.task_api) get_all_users() (in module user_login_manager.dal) get_current_user() (in module shared_libraries.security) (in module user_login_manager.userlogin) get_current_user_admin() (in module user_login_manager.userlogin) get_device() (in module device_manager.api.device_endpoints) get_device_parameter() (orchestration_engine.resources.DataLakeResource method) get_devices() (in module device_manager.api.device_endpoints) get_dicom() (in module protocol_manager.api.result_api) get_meta() (in module protocol_manager.api.result_api) get_mongo_database() (in module protocol_manager.db.mongodb) get_mrd_binary() (in module protocol_manager.api.result_api) get_mrd_path() (orchestration_engine.resources.DataLakeResource method) get_mri_sequence_by_id() (in module protocol_manager.api.mri_sequence_api) get_mri_sequence_file_by_id() (in module protocol_manager.api.mri_sequence_api) get_mri_sequence_header_file_by_id() (in module protocol_manager.api.mri_sequence_api) get_p10_dicom_bytes() (in module protocol_manager.tools.dicom_provider) get_patient() (in module patient_manager.api.dal) (in module patient_manager.api.routes) get_patient_list() (in module patient_manager.api.routes) get_patient_out() (in module patient_manager.api.routes) get_protocol() (in module protocol_manager.api.protocol_api) get_protocol_data() (in module protocol_manager.dal.protocol_dal) get_protocol_out_model() (in module protocol_manager.tools.helper) get_result() (in module device_manager.api.exam_requests) (in module protocol_manager.api.result_api) get_result_db() (in module protocol_manager.dal.result_dal) get_sequence() (in module device_manager.api.exam_requests) get_sequence_plot() (in module protocol_manager.tools.mri_sequence_plot) get_task() (in module device_manager.api.exam_requests) (in module protocol_manager.api.task_api) get_task_data() (in module protocol_manager.dal.task_dal) get_task_out() (in module protocol_manager.tools.helper) get_user_data() (in module user_login_manager.dal) get_user_from_token() (in module user_login_manager.dal) get_user_list() (in module user_login_manager.userlogin) get_user_out() (in module user_login_manager.userlogin) H handle_file_transfer() (in module device_manager.api.device_websocket) handle_output() (orchestration_engine.io.base.ScanHubIOManager method) handle_register() (in module device_manager.api.device_websocket) handle_status_update() (in module device_manager.api.device_websocket) height (patient_manager.api.db.Patient attribute) (shared_libraries.models.BasePatient attribute) I id (device_manager.api.db.Device attribute) (protocol_manager.db.postgres.AcquisitionTask attribute) (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Result attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.DeviceOut attribute) (shared_libraries.models.MRISequenceOut attribute) (shared_libraries.models.ProtocolOut attribute) (shared_libraries.models.ResultOut attribute) (shared_libraries.models.TaskOut attribute) IDATA_IO_KEY (in module orchestration_engine) IDataIOManager (class in orchestration_engine.io.idata_io_manager) image_smoothing() (in module orchestration_engine.assets.image_processing) indication (protocol_manager.db.postgres.Protocol attribute) (shared_libraries.models.BaseProtocol attribute) init_db() (in module device_manager.api.db) (in module patient_manager.api.db) (in module protocol_manager.db.postgres) (in module user_login_manager.db) INPROGRESS (shared_libraries.models.ItemStatus attribute) is_template (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.BaseProtocol attribute) (shared_libraries.models.BaseTask attribute) issuer (patient_manager.api.db.Patient attribute) (shared_libraries.models.BasePatient attribute) ItemStatus (class in shared_libraries.models) J jobs (in module orchestration_engine.repository) L last_activity_unixtime (shared_libraries.models.User attribute) (user_login_manager.db.UserSQL attribute) last_login_unixtime (shared_libraries.models.User attribute) (user_login_manager.db.UserSQL attribute) last_name (patient_manager.api.db.Patient attribute) (shared_libraries.models.BasePatient attribute) (shared_libraries.models.User attribute) (user_login_manager.db.UserSQL attribute) lifespan() (in module device_manager.main) (in module protocol_manager.main) load_acquisitions_slices() (in module protocol_manager.tools.mrd_provider) load_from_files() (orchestration_engine.io.base.ScanHubIOManager method) (orchestration_engine.io.dicom_io_manager.DicomIOManager method) (orchestration_engine.io.idata_io_manager.IDataIOManager method) load_from_path() (orchestration_engine.io.base.ScanHubIOManager method) (orchestration_engine.io.dicom_io_manager.DicomIOManager method) (orchestration_engine.io.idata_io_manager.IDataIOManager method) load_input() (orchestration_engine.io.base.ScanHubIOManager method) locate_mrd() (in module protocol_manager.tools.mrd_provider) LOG_CALL_DELIMITER (in module device_manager.api.device_endpoints) (in module device_manager.api.device_websocket) (in module protocol_manager) (in module user_login_manager.userlogin) login() (in module user_login_manager.userlogin) loginfromcookie() (in module user_login_manager.userlogin) logout() (in module user_login_manager.userlogin) M MALE (shared_libraries.models.Gender attribute) manufacturer (device_manager.api.db.Device attribute) (shared_libraries.models.DeviceDetails attribute) MappedBase (in module protocol_manager.db.postgres) MAX_INACTIVITY_TIME_SECONDS (in module user_login_manager.userlogin) MAX_SESSION_LENGTH_SECONDS (in module user_login_manager.userlogin) medical (shared_libraries.models.UserRole attribute) message (device_manager.api.device_websocket.TaskEvent attribute) meta (protocol_manager.api.result_api.CreateDicomResult attribute) (protocol_manager.db.postgres.Result attribute) (shared_libraries.models.SetResult attribute) modality (device_manager.api.db.Device attribute) (shared_libraries.models.DeviceDetails attribute) model_config (shared_libraries.models.BaseMRISequence attribute) (shared_libraries.models.BasePatient attribute) (shared_libraries.models.BaseProtocol attribute) (shared_libraries.models.BaseResult attribute) (shared_libraries.models.BaseTask attribute) (shared_libraries.models.DeviceCreationRequest attribute) (shared_libraries.models.DeviceDetails attribute) (shared_libraries.models.SetResult attribute) module device_manager device_manager.api device_manager.api.dal device_manager.api.db device_manager.api.device_endpoints device_manager.api.device_websocket device_manager.api.exam_requests device_manager.main orchestration_engine orchestration_engine.assets orchestration_engine.assets.acquisition_data orchestration_engine.assets.dicom_input orchestration_engine.assets.image_processing orchestration_engine.assets.mrpro_direct_reconstruction orchestration_engine.io orchestration_engine.io.base orchestration_engine.io.dicom_io_manager orchestration_engine.io.idata_io_manager orchestration_engine.jobs orchestration_engine.jobs.acquisition_data orchestration_engine.notifier orchestration_engine.repository orchestration_engine.resources orchestration_engine.sensors orchestration_engine.utils orchestration_engine.utils.dag_config orchestration_engine.utils.snr patient_manager patient_manager.api patient_manager.api.dal patient_manager.api.db patient_manager.api.routes patient_manager.main protocol_manager protocol_manager.api protocol_manager.api.mri_sequence_api protocol_manager.api.protocol_api protocol_manager.api.result_api protocol_manager.api.task_api protocol_manager.dal protocol_manager.dal.protocol_dal protocol_manager.dal.result_dal protocol_manager.dal.task_dal protocol_manager.db protocol_manager.db.mongodb protocol_manager.db.postgres protocol_manager.main protocol_manager.tools protocol_manager.tools.dicom_provider protocol_manager.tools.helper protocol_manager.tools.mrd_provider protocol_manager.tools.mri_sequence_plot shared_libraries shared_libraries.models shared_libraries.security shared_libraries.utils user_login_manager user_login_manager.dal user_login_manager.db user_login_manager.main user_login_manager.userlogin monitor_devices() (in module device_manager.api.device_websocket) MRD (shared_libraries.models.ResultType attribute) MRD_EXTENSIONS (in module protocol_manager.tools.mrd_provider) mrd_header (shared_libraries.models.AcquisitionPayload attribute) mrd_path (orchestration_engine.assets.acquisition_data.AcquisitionData attribute) MRDAcquisitionInfo (class in shared_libraries.models) MRDMetaResponse (class in shared_libraries.models) mri_sequence_form() (in module protocol_manager.api.mri_sequence_api) MRISequenceOut (class in shared_libraries.models) mrpro_direct_reconstruction() (in module orchestration_engine.assets.mrpro_direct_reconstruction) N name (device_manager.api.db.Device attribute) (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Task attribute) (protocol_manager.tools.mri_sequence_plot.TraceData attribute) (shared_libraries.models.BaseMRISequence attribute) (shared_libraries.models.BaseProtocol attribute) (shared_libraries.models.BaseTask attribute) (shared_libraries.models.DeviceCreationRequest attribute) NEW (shared_libraries.models.ItemStatus attribute) newpassword (shared_libraries.models.PasswordUpdateRequest attribute) NOT_GIVEN (shared_libraries.models.Gender attribute) NOT_SET (shared_libraries.models.ResultType attribute) NPY (shared_libraries.models.ResultType attribute) num_coils (shared_libraries.models.MRDAcquisitionInfo attribute) num_samples (shared_libraries.models.MRDAcquisitionInfo attribute) O oauth2_scheme (in module device_manager.api.device_endpoints) (in module device_manager.api.device_websocket) (in module protocol_manager.api.result_api) (in module shared_libraries.security) OFFLINE (shared_libraries.models.DeviceStatus attribute) on_run_canceled() (in module orchestration_engine.sensors) on_run_failure() (in module orchestration_engine.sensors) on_run_success() (in module orchestration_engine.sensors) ONLINE (shared_libraries.models.DeviceStatus attribute) orchestration_engine module orchestration_engine.assets module orchestration_engine.assets.acquisition_data module orchestration_engine.assets.dicom_input module orchestration_engine.assets.image_processing module orchestration_engine.assets.mrpro_direct_reconstruction module orchestration_engine.io module orchestration_engine.io.base module orchestration_engine.io.dicom_io_manager module orchestration_engine.io.idata_io_manager module orchestration_engine.jobs module orchestration_engine.jobs.acquisition_data module orchestration_engine.notifier module orchestration_engine.repository module orchestration_engine.resources module orchestration_engine.sensors module orchestration_engine.utils module orchestration_engine.utils.dag_config module orchestration_engine.utils.snr module origins (in module device_manager.main) ORIGINS (in module patient_manager.main) (in module protocol_manager.main) origins (in module user_login_manager.main) OTHER (shared_libraries.models.Gender attribute) P parameter (device_manager.api.db.Device attribute) (shared_libraries.models.DeviceDetails attribute) parse_ids() (in module protocol_manager.tools.mrd_provider) password_hash (user_login_manager.db.UserSQL attribute) password_of_requester (shared_libraries.models.PasswordUpdateRequest attribute) PasswordUpdateRequest (class in shared_libraries.models) Patient (class in patient_manager.api.db) patient_age (shared_libraries.models.AcquisitionLimits attribute) patient_gender (shared_libraries.models.AcquisitionLimits attribute) patient_height (shared_libraries.models.AcquisitionLimits attribute) patient_height_cm (protocol_manager.db.postgres.Protocol attribute) patient_id (patient_manager.api.db.Patient attribute) (protocol_manager.db.postgres.Protocol attribute) (shared_libraries.models.BaseProtocol attribute) (shared_libraries.models.PatientOut attribute) patient_manager module patient_manager.api module patient_manager.api.dal module patient_manager.api.db module patient_manager.api.routes module patient_manager.main module patient_weight (shared_libraries.models.AcquisitionLimits attribute) patient_weight_kg (protocol_manager.db.postgres.Protocol attribute) PatientOut (class in shared_libraries.models) position (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.BaseTask attribute) postgres_db_name_filepath (in module device_manager.api.db) (in module patient_manager.api.db) (in module protocol_manager.db.postgres) (in module user_login_manager.db) postgres_password_filepath (in module device_manager.api.db) (in module patient_manager.api.db) (in module protocol_manager.db.postgres) (in module user_login_manager.db) postgres_user (in module device_manager.api.db) (in module patient_manager.api.db) (in module protocol_manager.db.postgres) (in module user_login_manager.db) postgres_user_filepath (in module device_manager.api.db) (in module patient_manager.api.db) (in module protocol_manager.db.postgres) (in module user_login_manager.db) PREFIX_PATIENT_MANAGER (in module protocol_manager.api.protocol_api) (in module protocol_manager.api.result_api) progress (device_manager.api.device_websocket.TaskEvent attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.BaseTask attribute) Protocol (class in protocol_manager.db.postgres) protocol_delete() (in module protocol_manager.api.protocol_api) protocol_id (orchestration_engine.utils.dag_config.DAGConfiguration attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.BaseTask attribute) (shared_libraries.models.MRDMetaResponse attribute) protocol_manager module protocol_manager.api module protocol_manager.api.mri_sequence_api module protocol_manager.api.protocol_api module protocol_manager.api.result_api module protocol_manager.api.task_api module protocol_manager.dal module protocol_manager.dal.protocol_dal module protocol_manager.dal.result_dal module protocol_manager.dal.task_dal module protocol_manager.db module protocol_manager.db.mongodb module protocol_manager.db.postgres module protocol_manager.main module protocol_manager.tools module protocol_manager.tools.dicom_provider module protocol_manager.tools.helper module protocol_manager.tools.mrd_provider module protocol_manager.tools.mri_sequence_plot module PROTOCOL_MANAGER_URI (in module orchestration_engine.repository) PROTOCOL_NOTIFIER_KEY (in module orchestration_engine) protocol_router (in module protocol_manager.api.protocol_api) ProtocolManagerNotifier (class in orchestration_engine.notifier) ProtocolOut (class in shared_libraries.models) provide_p10_dicom() (in module protocol_manager.tools.dicom_provider) push_task_event() (in module device_manager.api.device_websocket) (orchestration_engine.notifier.DeviceManagerNotifier method) R RANGE_RE (in module protocol_manager.tools.mrd_provider) readiness() (in module device_manager.main) (in module patient_manager.main) (in module protocol_manager.main) (in module user_login_manager.main) reorder_tasks() (in module protocol_manager.api.task_api) reorder_tasks_data() (in module protocol_manager.dal.task_dal) resolve_dicom_path() (in module protocol_manager.tools.dicom_provider) resolve_dicom_path_from_db() (in module protocol_manager.tools.dicom_provider) ressources (in module orchestration_engine.repository) Result (class in protocol_manager.db.postgres) result_id (shared_libraries.models.MRDMetaResponse attribute) result_router (in module protocol_manager.api.result_api) RESULT_URI (in module device_manager.api.exam_requests) ResultOut (class in shared_libraries.models) results (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.TaskOut attribute) ResultType (class in shared_libraries.models) role (shared_libraries.models.User attribute) (user_login_manager.db.UserSQL attribute) router (in module device_manager.api.device_endpoints) (in module device_manager.api.device_websocket) (in module patient_manager.api.routes) (in module user_login_manager.userlogin) S salt (device_manager.api.db.Device attribute) (user_login_manager.db.UserSQL attribute) ScanHubIOManager (class in orchestration_engine.io.base) scientist (shared_libraries.models.UserRole attribute) send_device_parameter_update() (orchestration_engine.notifier.DeviceManagerNotifier method) send_json() (in module device_manager.api.device_websocket) sensors (in module orchestration_engine.repository) seq_file (shared_libraries.models.MRISequenceOut attribute) seq_file_extension (shared_libraries.models.MRISequenceOut attribute) seq_router (in module protocol_manager.api.mri_sequence_api) sequence (shared_libraries.models.AcquisitionPayload attribute) sequence_id (protocol_manager.db.postgres.AcquisitionTask attribute) (shared_libraries.models.BaseAcquisitionTask attribute) sequence_type (shared_libraries.models.BaseMRISequence attribute) SEQUENCE_URI (in module device_manager.api.exam_requests) serial_number (device_manager.api.db.Device attribute) (shared_libraries.models.DeviceDetails attribute) set_result() (in module device_manager.api.exam_requests) (in module protocol_manager.api.result_api) (orchestration_engine.notifier.ProtocolManagerNotifier method) set_task() (in module device_manager.api.exam_requests) SetResult (class in shared_libraries.models) sex (patient_manager.api.db.Patient attribute) (shared_libraries.models.BasePatient attribute) shared_libraries module shared_libraries.models module shared_libraries.security module shared_libraries.utils module SHIMS (shared_libraries.models.CalibrationType attribute) shutdown() (in module user_login_manager.main) signal_to_noise_ratio() (in module orchestration_engine.utils.snr) site (device_manager.api.db.Device attribute) (shared_libraries.models.DeviceDetails attribute) source (device_manager.api.device_websocket.TaskEvent attribute) STARTED (shared_libraries.models.ItemStatus attribute) startup() (in module patient_manager.main) (in module user_login_manager.main) status (device_manager.api.db.Device attribute) (patient_manager.api.db.Patient attribute) (protocol_manager.db.postgres.Protocol attribute) (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.BasePatient attribute) (shared_libraries.models.BaseProtocol attribute) (shared_libraries.models.BaseTask attribute) (shared_libraries.models.DeviceCreationRequest attribute) (shared_libraries.models.DeviceDetails attribute) T tags (shared_libraries.models.BaseMRISequence attribute) Task (class in protocol_manager.db.postgres) task_dir (orchestration_engine.utils.dag_config.DAGConfiguration attribute) task_id (orchestration_engine.utils.dag_config.DAGConfiguration attribute) (protocol_manager.db.postgres.Result attribute) (shared_libraries.models.BaseResult attribute) (shared_libraries.models.MRDMetaResponse attribute) task_ids (protocol_manager.api.task_api.TaskReorder attribute) task_router (in module protocol_manager.api.task_api) task_sse_queues (in module device_manager.api.device_websocket) task_status (device_manager.api.device_websocket.TaskEvent attribute) task_stream() (in module device_manager.api.device_websocket) task_type (protocol_manager.db.postgres.Task attribute) (shared_libraries.models.BaseAcquisitionTask attribute) (shared_libraries.models.BaseTask attribute) TASK_URI (in module device_manager.api.exam_requests) TaskEvent (class in device_manager.api.device_websocket) TaskOut (class in shared_libraries.models) TaskReorder (class in protocol_manager.api.task_api) tasks (protocol_manager.db.postgres.Protocol attribute) (shared_libraries.models.ProtocolOut attribute) TaskType (class in shared_libraries.models) timeout (orchestration_engine.notifier.DeviceManagerNotifier attribute) (orchestration_engine.notifier.ProtocolManagerNotifier attribute) token_hash (device_manager.api.db.Device attribute) token_type (shared_libraries.models.User attribute) TraceData (class in protocol_manager.tools.mri_sequence_plot) trigger_acquisition() (in module device_manager.api.device_websocket) type (protocol_manager.db.postgres.Result attribute) (shared_libraries.models.SetResult attribute) U update() (device_manager.api.db.Device method) (patient_manager.api.db.Patient method) (protocol_manager.db.postgres.Base method) update_device_parameter() (in module device_manager.api.device_endpoints) update_mri_sequence_endpoint() (in module protocol_manager.api.mri_sequence_api) update_patient() (in module patient_manager.api.dal) (in module patient_manager.api.routes) update_protocol() (in module protocol_manager.api.protocol_api) update_protocol_data() (in module protocol_manager.dal.protocol_dal) update_result_db() (in module protocol_manager.dal.result_dal) update_task() (in module protocol_manager.api.task_api) update_task_data() (in module protocol_manager.dal.task_dal) update_task_status() (in module device_manager.api.exam_requests) (in module protocol_manager.api.task_api) (in module protocol_manager.dal.task_dal) (orchestration_engine.notifier.ProtocolManagerNotifier method) update_user() (in module user_login_manager.userlogin) update_user_data() (in module user_login_manager.dal) UPDATED (shared_libraries.models.ItemStatus attribute) updated_at (shared_libraries.models.MRISequenceOut attribute) upload_to_xnat() (in module protocol_manager.api.result_api) User (class in shared_libraries.models) user_access_token (orchestration_engine.utils.dag_config.DAGConfiguration attribute) user_delete() (in module user_login_manager.userlogin) user_login_manager module user_login_manager.dal module user_login_manager.db module user_login_manager.main module user_login_manager.userlogin module USERLOGIN_HOST (in module shared_libraries.security) USERLOGIN_URI (in module shared_libraries.security) username (shared_libraries.models.User attribute) (user_login_manager.db.UserSQL attribute) username_to_change_password_for (shared_libraries.models.PasswordUpdateRequest attribute) UserRole (class in shared_libraries.models) UserSQL (class in user_login_manager.db) V validation_exception_handler() (in module device_manager.main) (in module patient_manager.main) (in module protocol_manager.main) (in module user_login_manager.main) W websocket_endpoint() (in module device_manager.api.device_websocket) weight (patient_manager.api.db.Patient attribute) (shared_libraries.models.BasePatient attribute) X x (protocol_manager.tools.mri_sequence_plot.TraceData attribute) (shared_libraries.models.XYZ attribute) xml_file (shared_libraries.models.MRISequenceOut attribute) xml_file_extension (shared_libraries.models.MRISequenceOut attribute) XYZ (class in shared_libraries.models) Y y (protocol_manager.tools.mri_sequence_plot.TraceData attribute) (shared_libraries.models.XYZ attribute) Z z (shared_libraries.models.XYZ attribute)
